Program Listing for File mesh.hpp

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/* This file is part of brille.

Copyright © 2019,2020 Greg Tucker <greg.tucker@stfc.ac.uk>

brille is free software: you can redistribute it and/or modify it under the
terms of the GNU Affero General Public License as published by the Free
Software Foundation, either version 3 of the License, or (at your option)
any later version.

brille is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU Affero General Public License for more details.

You should have received a copy of the GNU Affero General Public License
along with brille. If not, see <https://www.gnu.org/licenses/>.            */

#ifndef BRILLE_MESH_H_
#define BRILLE_MESH_H_
#include <set>
#include "array.hpp"
#include "array2.hpp"
#include "array_latvec.hpp" // defines bArray
#include <vector>
#include <array>
#include <omp.h>
#include "interpolation.hpp"
#include "interpolatordual.hpp"
#include "utilities.hpp"
#include "permutation.hpp"
#include <queue>
#include "triangulation_layers.hpp"
namespace brille {

template<class T, class S>
class Mesh3{
  using ind_t = brille::ind_t;
  using data_t = DualInterpolator<T,S>;
protected:
  TetTri mesh;
  data_t data_;
public:
  //constructors
  Mesh3(const bArray<double>& verts,
        const std::vector<std::vector<int>>& facets,
        const double max_volume=-1.0,
        const int num_levels=3,
        const int max_points=-1
      ){
    // this->mesh = triangulate(verts, facets, max_volume, min_angle, max_angle, min_ratio, max_points, trellis_fraction);
    this->mesh = triangulate(verts, facets, max_volume, num_levels, max_points);
    data_.initialize_permutation_table(this->size(), this->mesh.collect_keys());
  }
  Mesh3(const Mesh3<T,S>& other){
    this->mesh = other.mesh;
    this->data_ = other.data_;
  }
  Mesh3<T,S>& operator=(const Mesh3<T,S>& other){
    this->mesh = other.mesh;
    this->data_ = other.data_;
    return *this;
  }
  ind_t size() const { return this->mesh.number_of_vertices(); }
  ind_t vertex_count() const { return this->mesh.number_of_vertices(); }
  const bArray<double>& get_mesh_xyz() const{ return this->mesh.get_vertex_positions(); }
  const bArray<ind_t>& get_mesh_tetrehedra() const{ return this->mesh.get_vertices_per_tetrahedron();}
  // Get a constant reference to the stored data
  const data_t& data(void) const {return data_;}
  // Replace the data stored in the object
  template<typename... A> void replace_data(A... args) { data_.replace_data(args...); }
  template<typename... A> void replace_value_data(A... args) { data_.replace_value_data(args...); }
  template<typename... A> void replace_vector_data(A... args) { data_.replace_vector_data(args...); }
  template<typename... A> void set_value_cost_info(A... args) { data_.set_value_cost_info(args...); }
  template<typename... A> void set_vector_cost_info(A... args) {data_.set_vector_cost_info(args...);}
  size_t bytes_per_point() const {return data_.bytes_per_point(); }
  // Calculate the Debye-Waller factor for the provided Q points and ion masses
  template<template<class> class A>
  brille::Array<double> debye_waller(const A<double>& Qpts, const std::vector<double>& Masses, const double t_K) const{
    return data_.debye_waller(Qpts,Masses,t_K);
  }

  template<class R> unsigned int check_before_interpolating(const bArray<R>& x) const;
  template<class R>
  std::tuple<brille::Array<T>,brille::Array<S>>
  interpolate_at(const LQVec<R>& x) const {return this->interpolate_at(x.get_xyz());}
  template<class R>
  std::tuple<brille::Array<T>,brille::Array<S>>
  interpolate_at(const bArray<R>& x) const;
  template<class R>
  std::tuple<brille::Array<T>,brille::Array<S>>
  parallel_interpolate_at(const bArray<R>& x, const int nthreads) const;
  // template<typename R> std::vector<ind_t> which_neighbours(const std::vector<R>& t, const R value, const ind_t idx) const;
  std::string to_string(void) const {
    std::string str= data_.to_string();
    str += " for the points of a TetTri[" + mesh.to_string() + "]";
    return str;
  }
  void sort() {data_.sort();}
};

#include "mesh.tpp"

} // namespace brille
#endif // _MESH_H_